R Packages

BayesAdaptive Bayesian response-adaptive designs for clinical trials with multible disease types and multiple Biomarker-predefined subpopulation. It implements randomization and sequential testing based on a Bayesian 3-layer hierarchical Probit model. BayesAdaptive_1.0.tar.gz

BayesAdaptSurrogate Bayesian response-adaptive designs for clinical trials with binary surrogate outcomes. The packages implements randomization and sequential testing based on a joined probability model for early surrogate and late primary outcomes. BayesAdaptSurrogate_1.0.tar.gz

AddArmsToTrial_0.1.6.tar.gz Balanced and Adaptive Randomization methods for adding experimental arms to a platform trial. AddArmsToTrial_0.1.6.tar.gz
Bayesian Nonparametric Ordination for the Analysis of Microbial Communities (arXiv:1601.05156) ( MCMC-code )