Content

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Software

I develop open-source, freely available software for the analysis of high-throughput genomic data. My code is available through R packages that can be installed from GitHub or the Bioconductor Project.

R packages

    dmrseq: Inference for differentially methylated regions (DMRs) from bisulfite sequencing, available on GitHub
    scDD: Identification of differentially distributed genes in single-cell RNA-seq, available on Bioconductor
    MADGiC: Identification of cancer driver genes by integrating somatic mutation, expression, replication timing, and functional impact, available on GitHub

Last updated July 2017