• 6/18. Daphne has successfully passed her dissertation defense. Congratulations, Dr. Tsoucas!
  • 5/18. Congratulations to Yuxi Liu for successful Master thesis defense. Yuxi will enter the PhD program in Genetic Epidemiology at Harvard this Fall.
  • 4/18. Our group has received a pilot award from Chan-Zuckerberg Initiative for developing collaborative computational tools for the Human Cell Atlas. Our project will focus on developing new tools for integration of sequencing- and imaging-based single-cell gene expression data. The full annoucement can be found here.
  • 4/18. Daphne's paper on GiniClust 2 has been accepted for publication in Genome Biology. The software can be found at Github.
  • 3/18. Our collaborative work on the impact of inhibition of MICA/MICB shedding on promoting tumor immunity has been published in Science. We thank the Kai Wucherfennig lab for a rewarding collaboration.
  • 3/18. Our collaborative work on Cut&Run analysis of BCL11A has been accepted for publication in Cell. We thank the Stuart Orkin lab for a rewarding collaboration.
  • 2/18. Our collaborative work on the mouse cell atlas has been published in Cell. We thank the Guoji Guo lab for a rewarding collaboration.
  • 2/18. Jialiang's paper on super-enhancer hierarchy has been accepted for publication in Nature Communications.
  • 1/18. Luca's paper on the updated Haystack software has been accepted for publication in Bioinformatics.
  • 1/18. Our collaborative work on cancer immunotherapy resistance has been published in Science. We thank the Kai Wucherpfennig and Shirley Liu labs for a rewarding collaboration.
  • 8/17. We have received a new NIH R01 grant to study organizational structure of enhancers.
  • 7/17. Congratulations to Sara Garcia who will become a research staff scientist at Mass General Hospital and Harvard Medical School.
  • 7/17. Welcome our MIT RSI summer intern Zoe Weiss and new postdoc fellow Shengbao Suo.
  • 4/17. Our opinion paper on challenges and emerging directions in single-cell analysis has been accepted for publication in Genome Biology. We thank Radcliffe Institute for Advanced Study for their generous support and all the collaborators for their contributions. A preprint can be found here .
  • 3/17. Our collaborative work on Bmi1/crypt stem cell has been accepted for publication in Cell Stem Cell. We thank the Ramesh Shivdasani lab for a rewarding collaboration.
  • 3/17. Welcome our new group member Kamrine Poels.
  • 3/17. Our collaborative work on variant-aware mutagenesis has been accepted for publication in Nature Genetics. We thank the Stuart Orkin and Dan Bauer labs for a rewarding collaboration.
  • 2/17. Our paper on multi-level chromatin state annotation has been accepted for publication in Nature Communications. We thank Manolis Kellis' Lab for a rewarding collaboration.
  • 1/17. Daphne's review paper on single-cell cancer genomics has been published in Current Opinion in Genetics and Development.
  • 1/17. Sam has passed the qualifying exam. Congratulations!
  • Older news can be found here .