• 8/17. We have received a new NIH R01 grant to study organizational structure of enhancers.
  • 7/17. Congratulations to Sara Garcia who will become a research staff scientist at Mass General Hospital and Harvard Medical School.
  • 7/17. Welcome our MIT RSI summer intern Zoe Weiss and new postdoc fellow Shengbao Suo.
  • 4/17. Our opinion paper on challenges and emerging directions in single-cell analysis has been accepted for publication in Genome Biology. We thank Radcliffe Institute for Advanced Study for their generous support and all the collaborators for their contributions. A preprint can be found here .
  • 3/17. Our collaborative work on Bmi1/crypt stem cell has been accepted for publication in Cell Stem Cell. We thank the Ramesh Shivdasani lab for a rewarding collaboration.
  • 3/17. Welcome our new group member Kamrine Poels.
  • 3/17. Our collaborative work on variant-aware mutagenesis has been accepted for publication in Nature Genetics. We thank the Stuart Orkin and Dan Bauer labs for a rewarding collaboration.
  • 2/17. Our paper on multi-level chromatin state annotation has been accepted for publication in Nature Communications. We thank Manolis Kellis' Lab for a rewarding collaboration.
  • 1/17. Daphne's review paper on single-cell cancer genomics has been published in Current Opinion in Genetics and Development.
  • 1/17. Sam has passed the qualifying exam. Congratulations!
  • 12/16. Our collaborative work on the role of UTX in reglating natural killer T cell epigenetic program has been accepted for publication in Nature Immunology. We thank the Stuart Orkin and Florian Winau labs for a rewarding collaboration.
  • 9/16. We welcome our new group members Qian Zhu and Isha Sethi.
  • 8/16. Our collaborative work on single cell transcript profiling of intestine stem cells has been accepted for publication in Cell Reports. We thank the Ramesh Shivdasani Lab for a rewarding collaboration.
  • 7/16. Our new software PySCUBA, a Python version of SCUBA for single-cell gene expression data analysis, is now available at GitHub.
  • 6/16. Lan Jiang's paper on detecting rare cell types from single-cell gene expression data has been accepted for publication in Genome Biology. The software, called GiniClust, is publicly accessible at here.
  • 6/16. Congratulations to Luca Pinello who will become an Assistant Professor at Mass General Hospital and Harvard Medical School starting in the fall.
  • 5/16. Gregory Giecold's ECLAIR paper has been accepted for publication in Nucleic Acids Reseach. We thank Lorenzo Trippa for a rewarding collaboration.
  • 4/16. We welcome our new group members Daphne Tsoucas, Sam Tracy, and Jiabei Yang.
  • 3/16. Luca Pinello's CRISPResso paper has been accepted for publication in Nature Biotechnology. We thank Dan Bauer's Lab for a rewarding collaboration.
  • 3/16. Our collaborative work on PRC2 function in adult somatic cells has been accepted for publication in Cell. We thank Ramesh Shivdasani's Lab for a rewarding collaboration.
  • 3/16. Our collaborative work on the effect of high-fat diet on enhancing stemness has been published in Nature. We thank the labs of Yilmaz, Sabatini, and Orkin's for a rewarding collaboration.
  • 2/16. We welcome our new group member Ruben Dries.
  • 2/16. Our CRISPResso software is upgraded and more powerful! The new version can support pooled, whole genome,and comparative analyses. The changes are also described in the updated manuscript.
  • 1/16. Our ECLAIR tool is published in bioRxiv.
  • 1/16. Our collaborative work on single cell analysis of mouse ESCs has been accepted for publication in Cell Reports. We thank the labs of Stuart Orkin and Guoji Guo for a rewarding collaboration.
  • Older news can be found here .