Additional file 4. Fold-changes (FC) and functional categories of 57 selected genes (58 probes) modulated by HCV in all replicon clones

Table 1. Gene regulated in response to overexpression of human MYC cDNA in T-cell lymphocytes in a transgenic mouse model.  Significant gene networks significantly expressed below/above threshold  determined by SAM + IPA

Table 1a. Transcriptional responses in A549 cultures treated with zinc ionophores

Table 1b. Transcriptional responses in xenografts treated with zinc ionophores

Table S2. Among the optimally debulked tumors  263 probe sets were significantly associated with survival (P < 0.01; false discovery rate  0.84) based on Cox regression analysis

Table S3 572 survival-associated probe sets identified by Cox regression analysis (P < 0.01; false discovery rate  0.38)

Table 1. Top survival-associated probe sets (P < 0.001) identified for suboptimally debulked patients by Cox regression analysis

Table 1. Selected list of differentially expressed genes in Br4 cells (Up-regulated)

Table 1. Selected list of differentially expressed genes in Br4 cells (Down-regulated)

Table 1. Factors associated with TSA sensitivity based on expression profiles  sensitivity  and pathway analyses in the 16 NSCLC cell line panel and their functions

Table S4d. Excel File Including All Genes Found to Be Significantly Upregulated and Downregulated (B >/= 0) by Expression Array Analysis in Tip60- or p400-Knockdown ESCs (XLS 2268 kb) (up-regulated)

Table S4c. Excel File Including All Genes Found to Be Significantly Upregulated and Downregulated (B >/= 0) by Expression Array Analysis in Tip60- or p400-Knockdown ESCs (XLS 2268 kb) (Up-regulated)

Table S4b. Excel File Including All Genes Found to Be Significantly Upregulated and Downregulated (B >/= 0) by Expression Array Analysis in Tip60- or p400-Knockdown ESCs (XLS 2268 kb) (Down-regulated)

Table S4a. Excel File Including All Genes Found to Be Significantly Upregulated and Downregulated (B >/= 0) by Expression Array Analysis in Tip60- or p400-Knockdown ESCs (XLS 2268 kb) (Down-regulated)