Supplementary Table 3C: All significantly altered genes related to cell proliferation (by ontology analysis) at fold-change > 1.2 vs control (n=222/634; z-score = 1.91).

Supplementary Table 3B: All significantly altered genes related to cell cycle (by ontology analysis) at fold-change > 1.2 vs control (n=308/686; z-score = 7.75).

Table 3. Treatment effects on relative expression (fold-change versus control) of selected estrogen-induced genes on microarray analysis (Tamoxifen agonist pattern)

Table 3. Treatment effects on relative expression
 (fold-change versus control) of selected
 estrogen-induced genes on microarray
 analysis (Tamoxifen antagonist pattern)

Supplementary Table 3A: All significantly altered genes related to cell cycle (by KEGG pathway analysis) at fold-change > 1.2 vs control (n=53/89; z-score = 5.27).

Supplementary Table 3D: All genes with fold-change > 2 vs control significantly altered only by E2+Tam (n=169).

Table 2. Top 25 significant genes  differentially expressed between radiation-associated and control tumors  identified with Significant Analysis of Microarrays (SAM) (List of Significant Genes for Delta = 1.444)

Table 2. Molecules in the highest confidence (P = 1.0E?41) network of genes differentially expressed following CLOCK knockdown

Supplementary Table 3: List of differentially expressed genes between iMCL and cMCL cases

Table 2. Candidate antigens showing increased antibody reactivity after compared with before DLI for patients A and B

Supplemental Table 1. Listing of all identified protein interactions.

Table 1. Summary of Microarray Results of Proinflammatory Genes

Table S1. Studied the transcriptome influence of sik1 in ES cells using undifferentiated ES cells and comparing wild-type and sik1flp/flp cells and found the genes up-regulated in sik1flp/flp ES cells  FDR<5%.

Table S2. Studied the transcriptome influence of sik1 in ES cells using undifferentiated ES cells and comparing wild-type and sik1flp/flp cells and found the genes down-regulated in sik1flp/flp ES cells  FDR<5%.