Supplement Table 1. Three-Way Interaction Significant Genes

Supplement Table 3. Drug x p75 Interaction Significant Genes

Table 1. TAL1 targets differentially expressed in TAL1-positive versus TAL1-negative primary T-ALL samples

Table 2. TAL1 targets differentially expressed in TAL1-positive versus HOX11/HOX11L2-positive primary T-ALL samples

Supplementary Table 2. signature consisting of 512 genes  which was enriched in genes involved in transforming growth factor beta and RAS-mediated signaling pathways  that predicts pCR with a sensitivity of 78%  a specificity of 90%  and an overall accura

RT-PCR Breast Cancer Molecular Subtype Intrisinc Genes

Table 1. Genes significantly associated with MRD on day 46

Table 1a. Genes significantly associated with MRD on day 46: Genes underexpressed in MRD

Table 1b. Genes significantly associated with MRD on day 46: Genes overexpressed in MRD

Table 2. Genes Involved in Bone Metastasis of Breast Cancer

Table 1. List of genes with statistically significant (P<0.01) transcriptional changes in ACC3 cells as the result of Sox4 small interfering RNA knockdown

Table 2. The 50 probe sets detecting the greatest degree of transcript downregulation with Sox4 RNA interference knockdown in ACC3 cells

Table 3. The 50 probe sets detecting the greatest degree of transcript upregulation with Sox4 RNA interference knockdown in ACC3 cells

Table 1.  Seventeen genes differentially expressed in tumor and normal tissue detected by serial analysis of gene expression

Breast cancer molecular subtype Intrinsic/UNC gene list which contains 1300 genes and a proliferation signature.  The geneset classifier is designed for centroid based single sample predictions (SSP) of the five intrinsic molecular subtypes.

Supplemental Figure 1. Complete hierarchical cluster diagram of the 315-sample combined test set analyzed using the Intrinsic/UNC gene set  which was reduced to 306 genes based upon the gene overlap between datasets.

Supplementary Table 5:  1 431 Probe-sets significant in regression cohort