Supplementary Table 1. PDT-induced up-regulated genes  Significantly (p<0.05) up-regulated genes in PDT-treated versus control T24 cells are presented according to biological process and ranked by fold change (FC) expressed as log2ratio. Only genes with a log2ratio > 1 were included in the analysis.

Table 2. List of predictive genes identified by PAM after a fractionated scheme of 3 ? 3.5 Gy  organized by biological function

Supplementary data  Table 1. List of genes differentially expressed between low risk-patients and high risk-patients. Fold change (>1.5-fold) describes expression level in high risk-patients relative to low risk-patients. Only known genes are included.

Supplementary data  Table 2. List of genes differentially expressed (>2-fold) between low riskpatients and high risk-patients after a fractionated scheme. Fold change describes expression level in high risk-patients relative to expression level in low ris

20 genes (represented by 20 probe sets) that differed by greater than ñ4-fold in expression level between TM40D and TM40D-MB cells

Table III. Genes common to 5 virtual cohorts.

Table IV. Genes common to 4 virtual cohorts.

Table V. Genes common to 3 virtual cohorts.

Table VI. Genes common to 2 virtual cohorts.

Table II. Genes common to 6 virtual cohorts; 7 genes commonly listed among the 6 geographic virtual cohorts  3 (42.9%) of which were HLA family genes (HLA-DRB1  HLA-DRA and HLA-DPB1). Expression levels of all 7 genes were lower (0.67- to 0.41-fold) in HCC with early IHR than in HCC without recurrence

Supplemental Data 6; 274 differentially expressed 274 differentially expressed
probes representing 252 unique genes

Table S2b Genes up-regulated by WT p53 and down-regulated by p73 beta

Table 1 A selection of genes common to p53 and p73b responses associated with cell cycle

Table S2a Genes down-regulated by WT p53 and up-regulated by p73 beta.

Table II. Down-regulated genes in the GPG cell lines.

Table I. Up-regulated genes in the GPG cell lines

SuppTable S2a Gene List of Cluster 1 (cluster of genes associated with PCNSL identified by unsupervised analysis); genes not expressed in B cells except for LCK