Supplementary Table: up in clear cell (1345)

Table 2. All mir-100 predicted target genes that were overexpressed in clear cell ovarian cancer

Table 4. Top 25 mir-182 predicted target genes that were underexpressed in clear cell ovarian cancer and up-regulated after mir-182 knockdown

Table 5. Top 25 mir-30a predicted target genes that were underexpressed in clear cell ovarian cancer and up-regulated after mir-30a knockdown

Table 3. All mir-22 predicted target genes that were overexpressed in clear cell ovarian cancer

Supplementary Table: down in clear cell (1709)

Table 3 Chromosomal regions with differential expression composing the gastric MALT lymphoma signature and relevant genes mapped to these regions

Table 4 Chromosomal regions with differential expression composing the marginal zone signature and relevant genes mapped to these regions

Table 2a. Down-regulated (at least 1.5 fold change) miRNAs in Mantle Cell Lymphoma

Table 2b. Up-regulated (at least 1.5 fold change) miRNAs in Mantle Cell Lymphoma

Table S5. Common Hypoxia Signature Genes ranked by the Common Connectivity Score (from highest to lowest) and their expression changes in cell lines experiments  of hypoxia exposure and HIF1a siRNA

Table 1 List of top 20 common up-regulated genes and top 20 common down-regulated genes.

Table 3 Gene ontology of common down-regulated genes.

Table 2 Gene ontology of common up-regulated genes. Only genes in the top-five ranking of each group are shown.

Supplementary Table 7a: Genes that were significantly upregulated when gained (Mann-Whitney U test adjusted p<0.05).

Supplementary Table 7b: Genes that were significantly downregulated when lost (Mann-Whitney U test adjusted p<0.05).

Table 2. Genes that are significantly overexpressed when amplified

Table 1b. The 40 significant miRNAs correspond to 23 upregulated and 17 downregulated candidates  and the upregulation of miR-222 was the most significant

Table 1a. The 40 significant miRNAs correspond to 23 upregulated and 17 downregulated candidates  and the upregulation of miR-222 was the most significant event observed