Table 1. Gene expression profiling in HepG2 cells incubated with or without etoposide (e  50 micrometers) under normoxic (N) or hypoxic (H) conditions for 16 hours before RNA extraction  reverse-transcription and cDNA hybridization. Each value is the average of three ratio values calculated from three independent experiments. Mean ratios indicate a fold-increase or decrease in gene expression

TABLE 1. Genes in the ARED database; TTP has been shown to bind AU-rich elements (ARE) located in the 39-UTR of unstable mRNAs so the ARE Database version 2 (ARED2) (Bakheet et al. 2003) was searched to determine which of the 393 identified genes contain an ARE. Surprisingly  only 37 of the 393 genes identified as putative TTP ligands were present in the ARED2 database

Table S2 Probe sets in the BAALC signature that are underexpressed in the high BAALC group

Table S1 Probe sets in the BAALC signature that are overexpressed in the high BAALC group

Table 3b. Genes (including hypothetical genes/proteins and open reading frames) differentially expressed 2-fold or greater among the identified BAALC-associated gene-expression signature (Genes underexpressed in the high BAALC group)

Table 3a. Genes (including hypothetical genes/proteins and open reading frames) differentially expressed 2-fold or greater among the identified BAALC-associated gene-expression signature (Genes overexpressed in the high BAALC group)

Table 1. Summary of biological pathways and processes significantly overrepresented during cancer progression in the Nkx3.1; Pten mutant mice

SuppTable 2. Summary of gene expression profiling data for mouse orthologs of human prostate tumor markers

Table 1a. hMSCs EWS-FLI1 Repressed genes

Table 1. EWS-FLI-1–induced differentiation markers and candidate target genes

SuppFigure2b. Identity list of genes with a FDR < 0.05 repressed (red) after transcriptomic analysis between highly metastatic subpopulations and controll cell lines

SuppFigure2a. Identity list of genes with a FDR < 0.05 overexpressed (blue) after transcriptomic analysis between highly metastatic subpopulations and controll cell lines