Supplementary Table S3b The top 200 probe sets differentially expressed in pre-B ALL  compared to CD19+IgM- cells. Genes down-regulated in pre-B ALL

TABLE 1. Functional assignments for abbreviated group of Pdx-1 target genes based upon GO Pdx-1 target genes were assigned functions based upon the GOcategories of molecular function  biological process  or cellular component  and then classified into functional categories.

Table 1. Top-ranked genes targeted by OCT4 in human ESCs. Data represent the 50 highest-ranked genes with known functions that were enriched with anti-OCT4. Chromatin was analyzed by chromatin immunoprecipitation-DNA selection and ligation; n=3.

Table 2. Top-ranked genes targeted by OCT4 in human MSCs. Data represent the 50 highest-ranked genes with known functions that were enriched with anti-OCT4. Chromatin was analyzed by chromatin immunoprecipitation-DNA selection and ligation; n=3.

Table 3. Top-ranked genes targeted by OCT4 in human MSCs and human ESCs. Data represent the 50 highest-ranked genes with known functions that were enriched with anti-OCT4. Chromatin was analyzed by chromatin immunoprecipitation-DNA selection and ligation; n=3.

Supplementary Table I. Transcripts significantly regulated in H295R cells upon SF-1 overexpression.

67 unique transcripts overrepresented in EpCAM-selected samples at a level equal to or greater than that of the EpCAM antigen (TACSTD1) itself

Table II. Chromosomal regions discriminating T-ALL from T-LBL by CESH analysis linked with differentially expressed genes reported in the literature.

Table 2 Apoptosis-related genes operating in acute MS relapse

61 genes significantly associated with overall survival (P < 0.05) in the Chang data set

Table 1. Intrinsic SV40 T/t-antigen signature

Supplementary Table 4. List of growth factors expressed in MEF  human fibroblast and hESCs sorted based on descending order of signal intensity in MEF (Illumina platform). Only genes with median signal intensities >10 in MEF were retained in this list; Murine Growth Factors / Ligands