374 Gene Set: 374 genes highly enriched in cell cycle genes; best single predictor of breast cancer recurrence in an extensive metaset and could be validated in an independent external cohort

Supplementary Table 1. Cisplatin Gene List

Supplementary Table 2. Pemetrexed Gene List

Table 2. Representative deregulated genes in the androgen-independent and Low-T groups of Nkx3.1; Pten mutant mice

Table 3. Genes differentially expressed in Gstp-null mouse lungs relative to wild-type controls

Table S5 Results of the supervised analysis using SAM software of 71 triple-negative tumors comparing tumors from patients that developed distant metastases as first event (n = 17) with those from patients that remained free of distant metastases as first

Table III. 49 Genes increased in both cell lines and tumors

Table 1: Belinostat induces P21WAF1 and other HDAC core genes in transgenic mice bladders. Summary of changes in transgenic mice bladder gene expression for belinostat-treated versus control

Table 2: Belinostat induces 34 genes involved in cellular communication. Summary of fold changes in transgenic mice bladder gene expression for belinostat-treated versus control

Table 4. Genes regulated more than 2 folds by emodin treatment for 12 hours in NCI-H446 cells

Table 5. Genes regulated more than 2 folds by emodin treatment for 24 hours in NCI-H446 cells

Table 1. Top 49 probe sets sorted by frequency of how often they are ranked as no. 1 in 50 000 iterations

Supplementary Table 2: List of probesets obtained from the different analyses described in the main text.

Table 1b. Frequent decreased gene copy numbers identified by SNP arrays

Table 1a. Frequent increased gene copy numbers identified by SNP arrays

Table 2. Selection of hypericin-PDT-induced upregulated and p38MAPK-dependent genes

Table 1. Selection of hypericin-PDT-induced differentially expressed genes

Supplementary Table 2. PDT-induced down-regulated genes  Significantly (p<0.05) down-regulated genes in PDT-treated versus control T24 cells are presented according to biological process and ranked by fold change (FC) expressed as log2ratio. Only genes with a log2ratio > |1| were included in the analysis