Supplementary Table 2. Differentially expressed proteins relating to RNA post transcriptional modification

Table 1. List of the 16 kinases from the gene cluster identified byquality threshold-clustering

Supplementary Table 2: Differentially expressed tumor genes between African-American and European-American patients

Table 3. Most differently expressed tumor genes by race/ethnicity

Supplementary Table 3: Differently expressed tumor genes* annotated by GOBP term “Immune Response”

TABLE 3. Molecular Signature in Glioblastoma Multiforme Tumors; The most important deregulated genes associated with glioma biology are shown and negative median changes refer to down-regulated genes.

TABLE 4. Identification of Prognosis-related Genes Included in the Phosphatidylinositol-3-kinase Cluster also showing Univariate Cox regression analysis. Only genes with a false discovery rate  0.15 are shown. Genes are ordered by adjusted P values showing the HRs with their associated 95% CI.

Table 1. VAF347-induced gene expression changes in maturing DCs

Table1. The 33 genes identified as a predictor gene set for TP53 status

TABLE 1. Genes regulated by I-kappa-B-beta during mitochondrial respiratory stress signaling; set of genes that were up-regulated at least 2-fold by mtDNA depletion in a manner that was dependent upon the activity of I B

Supplement Table 1: Genes found upregulated in HCC by SAM analysis; 171 genes were expressed at a higher level in hepatocellular carcinoma in comparison to hepatocellular adenoma

Table 4. List of chromosome bands and their annotated gene sets found upregulated most significantly by gene set enrichment analysis in hepatocellular carcinoma and adenoma  respectively; Upregulated in hepatocellular carcinoma

Table 4. List of chromosome bands and their annotated gene sets found upregulated most significantly by gene set enrichment analysis in hepatocellular carcinoma and adenoma  respectively; Upregulated in hepatocellular adenoma

Table 5. Comparison of gene set enrichment analysis and significance analysis of microarray results; Thirty-nine out of forty-three genes dysregulated by significance analysis of microarray were also aberrant in gene set enrichment analysis.