Supplementary Table 6: Probesets whose expression positively correlates with miR-206 level within fusion positive tumors

Ten genes that showed the highest positive correlation with rapamycin
 activity are listed in order of their p values. (Rapamycin)

Ten genes that showed the highest positive correlation with rapamycin
 activity are listed in order of their p values. (Temsirolimus)

Supplementary Table 1b The literature pertaining to EMT in breast cancer was searched and molecules shown empirically to cause EMT or change during EMT were assembled: Down-Regulated Genes

Table 4 Genes which had expression profiles significantly correlated to CD24 expression within cell lines constituting the Basal B group

Table 2 Genes whose expression profiles most markedly and consistently discriminate the Basal B group from both the Basal A and Luminal groups

Table 3 Spearman r and associated p values for genes whose expression profiles across Basal B cell lines correlate and anti-correlate with CD24  as well as the slope as determined by a Deming Regression Model. Limited to those with associated p values?<?0.01 and slopes with a magnitude?>?0.5.

Supplementary Table 1a The literature pertaining to EMT in breast cancer was searched and molecules shown empirically to cause EMT or change during EMT were assembled: Up-Regulated Genes

Table 3. Comparison of gene profiling among different tissue types; Group-based comparisons for HCC-C (cirrhosis-associated hepatocellular carcinoma) versus the corresponding CB group and for HCC-NC (hepatocellular carcinoma arising in non-cirrhotic liver)versus NCB group are shown

Supplementary Table 1; publicly available microarray data set that included tumor expression data from 61 patients with pathologically confirmed EOC  including 34 with BRCA1/2 germline mutations (n  18  BRCA1; n   16  BRCA2)  and 27 without either mutation (ie  sporadic cancers)

Table 4 Functional grouping of genes that were upregulated and downregulated after ibuprofen treatment

Additional File 1: Selection of genes differentially expressed in PaCa 5061 cells vs. normal pancreas