Table 3 List of genes downregulated in clear cell sarcoma of soft tissue comprising the most significantly down-regulated genes (P<0.005; fold change<0.25)

Table 2 Most abundantly expressed genes in CCSST:The 54 most abundantly expressed genes in CCSST (median fold change  5.0; P  0.0005) are listed ordered according to their expression level with respect to the ?non-CCSST?
tumors.

Table 4 Comparison of GeneChip data from this study to expression profiling by Khan et al. (29) for neuroblastoma and Ewing?s tumors; List of 56 genes found suitable for tumor classification (Gene Class) by Khan et al. (29) for which also reliable data were generated in the study presented here

Table 1. Classification of genes down-regulated by HA-INI1. List of genes down-regulated during time course induction of hSNF5/INI1. Genes are classified by groups of functional activity.

Table 2. Classification of genes up-regulated by HA-INI1. List of genes up-regulated during time course induction of hSNF5/INI1.

Table 1 Discriminating features  ranked in order of significance

Table 2 Results from two sample t tests  by cell types

Table S 7. The 19 genes most frequent in the top 30 LOOCV t-test of the training set from the 10 random samplings for prediction of outcome.

Table S 4. The 29 genes that was matched in top 50 LOOCV t-test of the training set listed in table S2 for prediction of the preB and T ALL immunophenotypes.

Supplementary Table 2b Genes differentially expressed in D16 and D351

Supplementary Table 2a Genes differentially expressed in D16 and D351

Table 2 Fold changes of specific genes in PC3 cells treated with EMP for 6  36  72 h

Table 1 List of genes expressed differentially in mutant (MUT) versus wild type (WT)  exon 9 versus exon 11  familial versus sporadic  stomach versus small bowel  epithelioid versus spindle

Table 2 The 10 most significantly up- and downregulated genes following culture with s-thalidomide in U266 cells

Table 3 Disease Classification Masks containing 24 gene products  14 of which are known  while 10 are unknown