Seattle Bioconductor

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Slides

Pdf file containing Slides for talk

Packages

for (i in c("GeneSigDB_1.0.tar.gz", "iBBiG_1.0.tar.gz")){
  download.file(paste("http://bcb.dfci.harvard.edu/~aedin/courses/Seattle2012/", i, sep=""), i)     
  install.packages(i, repos=NULL, type="source")
}

source("http://www.bioconductor.org/biocLite.R")
biocLite("breastCancerVDX")

library(breastCancerVDX)
library(GeneSigDB)
library(iBBiG)

• GeneSigDB_1.0.tar.gz
• iBBiG_1.0.tar.gz

Workshop

• tutorial.Rnw
• tutorial.pdf
• tutorial.R

Further Data (not need for tutorial)

GeneSigDB in EnsEmbl, Entrez and Gene Symbols GeneSigDB_GS.RData

MSigDB MSigDB_C2.RData