Mehmet Samur

Mehmet Kemal Samur

Instructor

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My Website

 

Research

I am particularly interested in developing methods and tools that can be applied for genomic big data problems and can be used to lead us from innovative computational strategies to biologically meaningful results. In particular, I have been working on integrative methods for high throughput sequencing data from DNA and RNA based sequencing technologies to address challenges.

 

Biography

Akdeniz University, Turkey, Ph.D. Medical Informatics, 2013
Akdeniz University, Turkey, MSc. Medical Informatics, 2008

Gazi University, Turkey, BS, Computer Science, 2005
 

Select Publications

  1. Bae J,Samur MK, Munshi A, Hideshima T, Keskin D, Kimmelman A, Lee A, Dranoff G,Anderson KC, Munshi NC. Heteroclitic XBP1 Peptides Evoke Tumor-Specific Memory Cytotoxic T Lymphocytes against Breast Cancer, Colon Cancer, and Pancreatic Cancer Cells. OncoImmunology. 2014 . 10.4161/21624011.2014.970914
  2. Samur MK. RTCGAToolbox: A New Tool for Exporting TCGA Firehose Data. PLoS One.2014 Sep 2;9(9):e106397. doi: 10.1371/journal.pone.0106397. eCollection 2014.
  3. Rashid N, Sperling, Bolli N, Wedge D,Loo PV,Tai Y, Shammas M, Fulciniti M, Samur MK, Richardson P, Magrangeas F, Minvielle S, Futreal PA, Anderson KC, Avet-LoiseauH, Campbell PJ, Parmigiani G and Munshi NC. Differential and limited expression of mutant alleles in multiple myeloma. Blood. 2014 Sep 18. pii: blood-2014-04-569327.
  4. Samur MK, Shah PK, Wang X, Minvielle S, Magrangeas F, Avet-Loiseau H, Munshi NC, Li C. The shaping and functional consequences of the dosage effect landscape in multiple myeloma. BMC Genomics. 2013 Oct 2;14:672. doi: 10.1186/1471-2164-14-672.
  5. Samur MK, Yan Z, Wang X, Cao Q, Munshi NC, Li C, Shah PK. canEvolve: A Web Portal for Integrative Oncogenomics. PLoS One. 2013;8(2):e56228. doi: 10.1371/journal.pone.0056228. Epub 2013 Feb 13.
  6. Bae J, Munshi A, Li C, Samur MK Prabhala R, Mitsiades C, Anderson KC, Munshi NC. Heat shock protein 90 is critical for regulation of phenotype and functional activity of human T lymphocytes and NK cells. J Immunol. 2013 Feb 1;190(3):1360-71. doi: 10.4049/jimmunol.1200593. Epub 2013 Jan 4
  7. Yan Z, Shah PK, Amin SB, Samur MK, Huang N, Wang X, Misra V, Ji H, Gabuzda D, Li C. Integrative analysis of gene and miRNA expression profiles with transcription factor-miRNA feed-forward loops identifies regulators in human cancers. Nucleic Acids Res. 2012 Sep 1;40(17):e135.

 

Related Links

 

Keywords

genomics, big data, high throughput sequencing data